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These Banana Cottage Cheese Muffins are packed with 5 grams of protein per muffin thanks to blended cottage cheese, with no protein powder required. Ready in 30 minutes and perfect to prep for the week.

A cottage cheese banana muffins with chocolate chips with a bite taken out of it.

Banana muffins are one of the recipes I’m most known for on Choosing Chia. I’ve made so many versions over the years, and they consistently go viral because, honestly, everyone loves a good banana muffin! I’ve done Healthy Banana Nut Muffins for a classic, Banana Muffins with almond flour for a gluten-free grain-free twist, even Protein Banana Muffins with 10 grams of protein, and every time I share a new version, you guys love them. So when I started testing a cottage cheese version, I had very high standards for myself.

I’m happy to report these are genuinely one of my favourite versions I’ve made! The cottage cheese blends completely smooth into the batter, so you’d never know it’s there, but it keeps the muffins incredibly light and moist and adds 5 grams of protein per muffin without any protein powder. If you’ve ever made banana muffins that came out dense or dry, this is the recipe to try.

One thing I want to mention: I tested these with both all-purpose flour and oat flour, and both versions turned out great! The oat flour swap is 1:1, so there are no adjustments needed. It’s a great option if you’re gluten-free or just want a bit more fibre and whole grains.

Recipe Highlights

  • High in protein: The blended cottage cheese does all the work and also works great in these Blueberry Cottage Cheese Muffins, no protein powder needed.
  • Soft and fluffy: Cottage cheese keeps these muffins light and fluffy, even a few days after baking.
  • Customizable: I love baking with oat flour and use it in my classic Oat Flour Banana Muffins. Swap in oat flour 1:1 for a gluten-free option with extra fibre.
  • Great for meal prep: Bake a batch on Sunday and breakfast or snacks are sorted for the week. They also freeze really well, so you can always have one on hand.
  • Simple ingredients: Everything here is a pantry staple, no specialty items needed.

Ingredient Notes

Ingredients to make banana cottage cheese muffins.

Bananas: The riper the better, (you want lots of brown spots.) Overripe bananas are sweeter and mash more easily, which gives the muffins more sweetness and flavour. Keep your firm yellow bananas for Banana Overnight Oats or Banana Chia Pudding.

Cottage cheese: This is what makes these muffins different from every other banana muffin on the internet. Once it’s blended completely smooth, it disappears into the batter entirely but it does two things: it keeps the texture moist without making them dense, and it adds a meaningful amount of protein without protein powder. I tested these with both 2% cottage cheese and 0% cottage cheese and both work great, though I personally prefer 2% for a little richness. You can use any leftover cottage cheese to make my Cottage Cheese Queso Dip, it’s delicious!

Flour: All purpose flour, a 1-1 gluten-free flour blend or oat flour work here. I tested these with all purpose and oat flour. The all-purpose version has a classic texture; the oat flour version is slightly heartier with a bit more fibre and is naturally gluten-free.

*This is a recipe overview. The full recipe with measurements and instructions can be found below in the recipe card.

How To Make Cottage Cheese Banana Muffins

mashed banana in a mixing bowl.

Step 1: Mash the bananas.

eggs, cottage cheese, maple syrup, and banana in a mixing bowl.

Step 2: add the eggs, cottage cheese, maple syrup, coconut oil and vanilla and mix.

wet and dry ingredients for banana cottage cheese muffins in a mixing bowl.

Step 3: Add the flour, baking powder, baking soda, salt, cinnamon and nutmeg.

cottage cheese banana muffin batter in a clear mixing bowl.

Step 4: Gently fold the batter together. Add any mix-ins you love at this step.

unbaked banana muffins in a muffin pan.

Step 5: divide the batter between 12 muffin cups.

cottage cheese banana muffins in a muffin pan.

Step 6: Bake at 375° for 18-24 minutes.

Mix-In Ideas

Banana muffins are great straight up as they are, but they’re also always delicious with different mix-ins or flavour variations. I went with half classic and half chocolate chip for mine, but here are so more ideas.

  • Chocolate chips: Fold in 1/2 cup of chocolate chips. Dark chocolate or semi-sweet both work great.
  • Blueberries: Fresh or frozen blueberries are a natural match with banana. Fold in about 3/4 cup and they’ll burst as the muffins bake. If you love blueberries also try my Healthy Blueberry Oatmeal Muffins.
  • Chopped walnuts or pecans: Add 1/2 cup for a bit of crunch and some extra healthy fats. Walnuts are my personal favourite with banana!
  • Peanut butter or almond butter: Swirl a tablespoon into the top of each muffin before baking for a banana-nut butter combo that’s really hard to beat.

How To Store

Store in an airtight container in the refrigerator for up to 5 days. Because of the cottage cheese, I recommend keeping them refrigerated rather than leaving them out at room temperature after the first day.

To freeze let the muffins cool completely, then transfer to a zip-lock bag or airtight container and freeze for up to 3 months. Thaw overnight in the fridge or warm them up in the microwave for 30 to 60 seconds.

Jess’s Tips

  • Weigh your flour for best results: Too much flour is the most common reason banana muffins turn out dense. I recommend using a kitchen scale and measuring 220g. If you don’t have a scale, use the spoon-and-level method: spoon flour gently into your measuring cup and level it off. Don’t scoop directly from the bag.
  • Blend the cottage cheese: Any lumps left in the cottage cheese will show up in your finished muffins.
  • Use very ripe bananas: The browner the better. This adds natural sweetness.
  • Don’t overmix: Stir just until the dry ingredients are incorporated. This is the other big reason muffins turn out tough.
  • Start checking at 18 minutes: Baking time will vary depending on your oven. A toothpick inserted in the centre should come out clean, and the tops should be golden.
  • Let them cool before storing: Cool completely on a wire rack before putting them in a container. Storing them warm traps steam and makes them soggy on the bottom.

Frequently Asked Questions

Do I have to blend the cottage cheese?

No, however this will leave visible curds of cottage cheese in the muffins. I prefer blending it but the choice is up to you.

Can I use Greek yogurt instead of cottage cheese?

Yes. I’m a big fan of Greek yogurt in muffins like in my Healthy Lemon Poppy Seed Muffins and it makes an excellent swap. Swap for equal amounts.

A banana muffin with a bite taken out of it.

Tried these Cottage Cheese Banana Muffins? Leave a review below and tag me @choosingchia on InstagramTikTok, or Facebook I love seeing your recreations!

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A cottage cheese banana muffins with chocolate chips with a bite taken out of it.

Cottage Cheese Banana Muffins

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  • Author: Jessica Hoffman
  • Prep Time: 10 minutes
  • Cook Time: 20 minutes
  • Total Time: 30 minutes
  • Yield: 12 muffins
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

These Cottage Cheese Banana Muffins are soft and fluffy and packed with protein thanks to cottage cheese!


Ingredients

Units
  • 1 3/4 cups all-purpose flour (220g)
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 1 teaspoon cinnamon
  • 1/4 teaspoon nutmeg
  • 2 medium overripe bananas, mashed (about 1 cup)
  • 1 cup cottage cheese, blended smooth
  • 2 eggs
  • 1/3 cup maple syrup
  • 1/4 cup coconut oil, melted
  • 1 teaspoon vanilla extract

Instructions

  1. Preheat the oven to 375°F and line a muffin pan with muffin liners.
  2. Blend the cottage cheese until completely smooth, then set aside.
  3. In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg.
  4. In a separate bowl, mash the bananas well, then add the blended cottage cheese, eggs, maple syrup, coconut oil, and vanilla. Mix until well combined.
  5. Add the wet ingredients to the dry and stir just until incorporated — don’t overmix.
  6. Divide the batter evenly among the muffin liners, filling each about 3/4 full.
  7. Bake for 18 to 24 minutes, until a toothpick inserted in the centre comes out clean and the tops are golden.
  8. Let cool in the pan for 5 minutes, then transfer to a wire rack.

Notes

  • Weigh your flour for more a more accurate measurement.
  • Don’t overmix the batter. A few streaks of flour are ok.
  • Add any mix-ins you love like chocolate chips or walnuts
  • Cool completely before storing.
  • Store in the fridge

Nutrition

  • Serving Size: 1 muffin
  • Calories: 175
  • Sugar: 7g
  • Fat: 6g
  • Carbohydrates: 25g
  • Fiber: 1g
  • Protein: 5.5g

Hi, I'm Jess!

Choosing Chia is a blog all about healthy vegetarian recipes that are easy to follow, taste delicious and focus on wholesome ingredients. I started the blog after a spontaneous trip to India where I studied the practice of yoga and wellness.

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