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These Healthy Gingerbread Muffins are made with molasses, coconut sugar and warm spices like ginger, cinnamon, nutmeg and cloves. They’re soft and moist inside, lower in sugar than a lot of muffin recipes and take about 30 minutes to make.

healthy gingerbread muffins

Notes From My Kitchen

I make these healthy gingerbread muffins every year around the holidays. They’re simple to make, they’re lower in sugar than a lot of other muffin recipes, and they have a really soft, moist texture inside.

I tested them with both coconut sugar and brown sugar, and both work well, so use whichever you have on hand.

They’re perfect with a mug of my Homemade Chai Tea Latte, and if you’re in a gingerbread mood, bake a batch of my Healthy Gingerbread Cookies too.

Recipe Highlights

  • Cozy gingerbread flavour: four warm spices plus molasses in every bite.
  • Dairy-free as written: made with coconut oil and almond milk.
  • No mixer needed: just two bowls and a whisk.
  • A holiday breakfast favourite: serve them with my Gingerbread Latte for the full gingerbread experience.

Key Ingredients And Substitutions

  • Flour: all-purpose flour gives you the softest muffins. For more whole grains, use half all-purpose and half whole wheat flour, or half all-purpose and half oat flour like in my Oat Flour Banana Muffins.
  • Molasses: I like blackstrap molasses for a bolder flavour and a darker, richer colour, but regular molasses works too. It’s the same molasses I use in my Chewy Ginger Molasses Cookies.
  • Coconut oil: melt it and let it cool slightly before mixing it with the eggs so they don’t start to cook.

How To Make Healthy Gingerbread Muffins

*This is a recipe overview. The full recipe with measurements and instructions can be found below in the recipe card.

Step 1

Stir the flour, coconut sugar, spices, baking soda and salt together in a bowl.

Step 2

In a separate bowl, whisk together the coconut oil, eggs, molasses and almond milk.

Step 3

Combine the wet and dry ingredients and gently fold them together until just combined.

Step 4

Fill lined muffin cups two-thirds of the way full and bake at 350°F for 15 to 20 minutes, until a toothpick comes out clean.

How To Store

Store the muffins in a sealed container on the counter for up to 5 days, or freeze them for up to 2 months. Let frozen muffins thaw on the counter, or warm them in the oven for a few minutes before serving.

Jess’s Tips

  • Don’t overmix: fold the batter just until combined. Overmixing makes the muffins dense.
  • Don’t overfill the cups: fill them two-thirds to three-quarters of the way full so the muffins don’t overflow.
  • Add a crunchy top: sprinkle the muffins with a little raw cane sugar before baking for an extra hint of sweetness.
  • No muffin liners? Grease the pan with cooking spray and add the batter right to the pan.
  • Want more muffins for the freezer? My Healthy Pumpkin Banana Muffins With Streusel freeze just as well.

Frequently Asked Questions

Can I make these gingerbread muffins vegan?

Yes! Swap the eggs for 2 flax eggs (2 tbsp ground flaxseed mixed with 6 tbsp water and left to gel for 5 minutes). They’re already dairy-free.

Can I make these gingerbread muffins gluten-free?

Yes, use a 1-1 gluten-free flour blend in place of the all-purpose flour.

a healthy gingerbread muffin

Try These Gingerbread Recipes Next!

If you tried these Healthy Gingerbread Muffins leave a review below and tag me @choosingchia on Instagram, TikTok, or Facebook I love seeing your recreations!

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Healthy Gingerbread Muffins

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.8 from 6 reviews
  • Author: Jessica Hoffman
  • Prep Time: 15 minutes
  • Cook Time: 15 minutes
  • Total Time: 30 minutes
  • Yield: 12 muffins
  • Category: Dessert
  • Method: Bake
  • Cuisine: American
  • Diet: Vegetarian

Description

These Healthy Gingerbread Muffins are soft, moist and lower in sugar, made with molasses, coconut sugar and warm spices. They’re perfect for a cozy holiday breakfast or snack!


Ingredients

Units

Instructions

  1. Preheat the oven to 350 degrees F and line a muffin pan with paper liners.
  2. Mix the dry ingredients together in a bowl and the wet ingredients together in a separate bowl.
  3. Pour the dry ingredients into the wet, adding one third of the flour mixture at a time, and mix until just combined.
  4. Fill each muffin cup two-thirds to three-quarters of the way full with batter (don’t fill them more, or the muffins will overflow).
  5. Bake for 15 to 20 minutes, or until a toothpick comes out clean.

Notes

  • Coconut sugar and brown sugar both work well in this recipe.
  • For more whole grains, use half all-purpose flour and half whole wheat or oat flour.
  • Use blackstrap molasses for the best flavour and a darker colour.
  • To make it vegan, use 2 flax eggs (2 tbsp ground flaxseed mixed with 6 tbsp water, left to gel for 5 minutes).
  • Don’t overmix the batter, or the muffins will be dense.

Storage

Store in a sealed container on the counter for up to 5 days, or freeze for up to 2 months.


Nutrition

  • Serving Size: 1 muffin
  • Calories: 240
  • Sugar: 12g
  • Fat: 12g
  • Saturated Fat: 10g
  • Carbohydrates: 30g
  • Fiber: 4g
  • Protein: 4g

Hi, I'm Jess!

Choosing Chia is a blog all about healthy vegetarian recipes that are easy to follow, taste delicious and focus on wholesome ingredients. I started the blog after a spontaneous trip to India where I studied the practice of yoga and wellness.

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31 Comments

  1. Jana C says:

    These are amazing! Perfect texture and just the right amount of sugar. So good!! 

    1. Jessica Hoffman says:

      Happy you enjoyed Jana!

  2. Nicola Heskin says:

    Hi tried this today. Quite a healthy muffin not very sweet and subtly spicy – will give these to my toddler and child for brekkie with some banana and cream cheese.

    1. Jess says:

      Hi Nicola, thank you for the feedback! Happy to hear you and your toddler enjoy the recipe!

  3. christiane says:

    Hi, I made these muffins today, they are delicious, fluffy and light. Not too sweet and the flavors are subtle enough to enjoy a few of them in one sitting, haha!

    1. JessH says:

      Hi Christiane! I’m so happy you enjoyed them! They’re one of my favourites to make in the winter..so warming!

  4. Nandi says:

    Hi, I loved the recipe but a question… is the ginger fresh ginger or ginger powder?

    Thank you

    1. JessH says:

      Hi Nadi,

      I use ginger powder, but these would be delicious with fresh ginger as well!

  5. Mari says:

    These look delicious. Can I use oat flour instead of the spelt? Thanks.

    1. JessH says:

      Hi Mari! I haven’t tried using oat flour instead but if you do the consistency would probably be a bit more “gummy” or gooey texture!

  6. Emma coutts says:

    Omg I made these just before and they’re so delicious and the right amount of spice and sweetness, very moist! Would be yum to have as a warm dessert with some sort of healthyish Icecream. Love these

    1. JessH says:

      Thanks so much Emma! Really glad you enjoy them. And that sounds delicious to have them with ice cream, a little treat! 😉

  7. Iga @ Dietmap says:

    Can i use gluten free flour?

    1. JessH says:

      You can substitute with gluten-free flour, however you will want to add a 1/2tsp-1 tsp of xantham gum so the muffins will rise properly and have the right texture!

  8. Edwina | Induction Cooking says:

    I love using molasses when baking. These muffins look fantastic. Is it 1/3 cup molasses? The word “cup” is missing from the recipe.
    One more question, if I don’t have coconut sugar, could I use the same amount of honey instead?

    1. JessH says:

      Hi Edwina! Yes it is cups. And you can replace coconut sugar with brown or white sugar, and honey as well! I believe honey may change the texture a bit-make them a bit more moist, but I’m sure they will turn out equally delicious!

  9. Alexandra says:

    Going to make these! But do you think I can take honey or maple syrup instead of molasses?

    1. JessH says:

      Hi Alexandra, yes of course! it will change the flavour slightly but work just as well!

  10. Kiki says:

    Hi! Do you think I could use all purpose flour instead of spelt? Also does 1/3 molasses mean “1/3 cup”?

    1. JessH says:

      Hi Kiki, yes you can replace the spelt with any plain flour you like. and it is 1/3 cup molasses, it has been edited correctly in the recipe!